LSM Upgrade Kit

Compact FLIM and FCS Upgrade Kit for Laser Scanning Microscopes

Compact FLIM and FCS upgrade kit that adds advanced functional imaging and correlation analysis to existing laser scanning microscopes.
Compact FLIM and FCS upgrade kit for laser scanning microscopes

Key Benefits

Multiple advanced imaging modes in one system
Maintenance-free and easy to use
High flexibility for diverse imaging needs
Improve quantitative data quality and consistency
Characterize a wider range of samples with one system
Expert-level support for stable long-term operation

Time-Resolved Imaging Upgrades for Laser Scanning Microscopes

Unlock a New Dimension of Time-Resolved Imaging for Your LSM

Confocal laser scanning microscopes are essential tools across life science and materials science, offering high-resolution imaging for a broad range of fluorescent and phosphorescent samples. By adding time-resolved techniques, an LSM unlocks a new dimension of quantitative information, uncovering molecular interactions, environmental parameters, and photophysical properties in advanced materials such as semiconductors. PicoQuant’s upgrade kits provide a flexible path to bring various methods like FLIM, FCS, and FRET to existing LSM platforms. This empowers research labs, imaging facilities, and industrial teams to expand their experimental reach, strengthen data quality, and adopt powerful functional imaging workflows without replacing their microscope.

General setup scheme of a LSM Upgrade Kit

What’s in the Kit?

The LSM Upgrade Kit integrates as an external add-on and connects directly to the microscope’s existing scan and detection pathways. It consists of three core components:

  • Picosecond pulsed excitation sources
  • Single-photon counting detectors
  • TCSPC acquisition unit with integrated analysis software

Together, they enable time-resolved imaging and correlation techniques on a wide range of LSM platforms without modifying the core microscope.

Seamless Integration with Leading LSM Systems

The upgrade kit integrates seamlessly with leading laser scanning microscopes. It uses existing scanning optics and detection pathways while adding time-resolved functionality without modifying the core system.

Nikon logo

Nikon

Compatible with Nikon A1, A1R, and AX series.

  • Excitation wavelengths: 375 nm – 900 nm
  • Dual mode laser unit available for pulsed and CW imaging with the Nikon AX confocal microscope
  • Parallel use of pulsed and CW/MPE lasers
  • Confocal and NDD detection options
  • FLIM & FCS acquisition integrated in NIS-Elements
  • Supports multicolor and polarization measurements
  • Direct coupling of detectors to Nikon interface ports
Zeiss logo

Zeiss

Compatible with Zeiss LSM 880, and LSM 980 systems.

  • Excitation wavelengths: 405 nm – 640 nm
  • Parallel use of pulsed PicoQuant lasers and Zeiss CW or MPE lasers
  • Confocal and NDD detection in combination with NLO for upright and inverse microscopes
  • SymPhoTime 64 integration into the LSM ZEN software for FLIM and FCS
  • Enables multicolor and polarization-resolved measurements
Evident Scientific Logo

Evident

Compatible with Evident FluoView Microscopes: FV3000, FV4000 and FV5000

  • Excitation wavelengths: 405 – 900 nm
  • Supports pulsed and CW laser operation across full wavelength ranges
  • Works with standard and SIM scanners for flexible excitation
  • Confocal and NDD detection options for deep-tissue FLIM
  • Direct detector coupling through dedicated Evident interface ports
  • Enables multicolor and polarization-resolved measurements
Abberior Logo

Abberior

Compatible with abberior: STEDYCON, MIRAVA and FACILITY

  • Excitation wavelengths: 405 nm (CW), 488nm – 640 nm (pulsed)
  • 3-4 High-QE avalanche photodiode detectors
  • No additional lasers or detectors required
  • Full integration of MultiHarp 150P into the STEDYCON software via TIMEBOW lifetime imaging, including multichannel, line-interleaved, pixel-interleaved acquisition, phasor-based analysis, confocal and STED super-resolution FLIM imaging
  • Optional: writing of .ptu-file photon streams alongside the abberior file format
  • Data analysis using abberior LiGHTBOX or the powerful SymPhoTime 64 software

Note: For Abberior and Florida Lifetime Imaging systems, the time tagger (and software if required) is fully sufficient to enable FLIM functionality. In these configurations, only the time-tagger component of the LSM Upgrade is supplied, as no additional hardware modules are needed. Support and Installation is handled by the OEM partner.

Relevant for Your Research​

Matching Applications & Methods​

Switcher A&M
Concept illustration of optical environmental sensing where time-resolved fluorescence lifetime detection monitors dynamic environmental signals and trace compounds.
Life Science | Materials Science | Metrology
Fluorescence lifetime imaging of MDCK cell membranes labeled with the tension probe Flipper-TR visualizes membrane tension changes during osmotic stress in mechanobiology experiments.
Life Science
Fluorescence lifetime imaging microscopy of plant tissue showing structural organization through intrinsic autofluorescence from plant cell components.
Life Science

System Components

The LSM Upgrade Kit combines modular excitation, detection, and analysis components to enable time-resolved imaging on existing laser scanning microscopes.

PicoQuant pulsed laser and LED sources

Flexible Picosecond Excitation

The excitation module provides flexible, multi-color picosecond laser illumination from 405 to 900 nm. Multiple laser heads are combined in a compact Laser Combining Unit (LCU) for single- or multicolor operation and fiber-coupled into the LSM for low-background excitation. Repetition rate and laser power can be adapted to match fluorescence or phosphorescence lifetimes while minimizing bleaching. Advanced excitation schemes, including pulsed interleaving, pulse trains for long-lived probes, and automated wavelength switching, are fully supported. Multi-photon excitation can be integrated when required.

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Overview image of PicoQuant Time Tagging and TCSPC units including HydraHarp 500, MultiHarp 150/160, PicoHarp 330, and TimeHarp 260.

High-Resolution TCSPC Detection

The TCSPC module provides precise timing down to the picosecond range while covering long-lived emission processes up to the millisecond regime. This broad dynamic range enables accurate FLIM, PLIM, FRET, and FCS measurements within a single acquisition workflow. All photons are recorded in a Time-Tagged Time-Resolved (TTTR) format, capturing arrival time, detection channel, and scanner synchronization signals. This universal data format supports high-throughput imaging, correlation analysis, and advanced time-resolved experiments with minimal acquisition time.

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PicoQuant's hybrid and SPAD single-photon detectors

High-Sensitivity Multichannel Detection

The detection module offers single-photon sensitivity and supports up to four parallel channels for multicolor, polarization-resolved, and deep-tissue measurements. Configurable for confocal and non-descanned detection, it enables flexible setups for FLIM, FRET, FCS, anisotropy, and correlation analysis. Confocal configurations use fiber coupling for precise spatial detection, while non-descanned pathways support multiphoton excitation and high-efficiency collection in scattering samples. This versatility allows accurate lifetime separation, improved signal quality, and reliable measurements across life science and materials research.

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NovaFLIM software interface for fluorescence lifetime imaging analysis

Integrated Acquisition & Analysis Software

SymPhoTime 64 provides intuitive data acquisition and online analysis for FLIM, FRET, FCS, FLCS, anisotropy, and related time-resolved methods. A dedicated interface to the LSM enables fast previews, large-format FLIM imaging, time series, z-stacks, and multipoint measurements within a transparent, TTTR-based workflow.

For advanced offline analysis, NovaFLIM delivers high-performance, GPU-accelerated processing of FLIM, FLIM-FRET, and anisotropy data. Powerful batch analysis of z-stacks, time-lapse series, and stitched images, combined with flexible and reproducible ROI handling, ensures efficient, publication-ready quantitative imaging.

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Application Examples

The following examples demonstrate how the LSM Upgrade Kit enables advanced time-resolved and polarization-resolved measurements in living cells and complex biological samples.

Dynamic In Vivo FLIM of Transcription Factors

Rapid FLIM enabled dynamic imaging of Venus-fused transcription factors in living cells at one frame per second (30 µs/px). More than 100 photons per pixel were collected with minimal bleaching, allowing repeated scanning of nuclear structures. Measurements were performed using the LSM Upgrade Kit on a Zeiss LSM 780.

FLIM image of OGB-1-loaded CA1 neurons and astroglia

FLIM-Based Monitoring of Resting Ca²⁺ Levels in Brain Tissue

Using the LSM Upgrade Kit on an Olympus FluoView FV1000, FLIM enables quantitative mapping of resting Ca²⁺ concentrations in neurons and astroglia. The lifetime of Oregon Green BAPTA-1 correlates directly with nanomolar Ca²⁺ levels and remains unaffected by intensity fluctuations, photobleaching, pH, viscosity, or ion concentration changes.

Anisotropy image of C6-NBD-PC labeled CHO cell membranes

In-Cell Fluorescence Anisotropy Imaging of Membrane Order

Fluorescence anisotropy imaging of C6-NBD-PC–labeled CHO cells reveals differences between liquid-ordered and liquid-disordered membrane phases. Higher anisotropy in horizontal membranes indicates restricted probe rotation and ordered lipid organization. Measurements were performed on an Olympus FluoView FV1000 equipped with the LSM Upgrade Kit and polarization extension.

FCS measurement of GFP-Ago2 in nucleus and cytoplasm

Quantifying Protein Complex Dynamics with FCS on an LSM

The LSM Upgrade Kit enables precise Fluorescence Correlation Spectroscopy (FCS) measurements within defined cellular subcompartments. Diffusion analysis of GFP-Ago2 in nucleus and cytoplasm of ER293 cells revealed compartment-specific mobility differences, reflecting variations in RISC complex size and assembly state.

In-Depth Scientific Resources

Premium Resources

Access in-depth application notes and scientific posters with detailed methods, measurement data, and real-world use cases.

Application Note: Time-Gated FCS

Time-gated FCS for improved background suppression and accurate concentration measurements

Poster: One Pattern Analysis

Poster on one pattern analysis for FLIM-FRET, enabling quantitative determination of protein interactions, binding and proximity in living plant cells.

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Technical Documentation and Data

Technical Downloads

System Overview Zeiss LSM 990

Covering excitation, detection, TCSPC data acquisition and system configuration

Zeiss LSM 990 – Preinstallation Requirements

Covering setup, room conditions, safety and system compatibility

System Overview Zeiss LSM 980

Covering excitation, detection, TCSPC data acquisition and configurations

System Overview Zeiss LSM 710, LSM 780 and LSM 880

Covering excitation, detection, TCSPC data acquisition and configurations

System Overview for Evident FV5000 (MP)

System overview of PicoQuant FLIM/FCS integration for Evident FV5000 (MP), covering excitation, detection, TCSPC data acquisition and configurations.

Evident FV5000 – Preinstallation Requirements

Covering setup, room conditions, safety and system configuration

System Overview for Evident FV4000

Covering excitation, detection, TCSPC data acquisition and configurations

System Overview for Evident FV3000

Covering excitation, detection, TCSPC data acquisition and configurations

System Overview Nikon A1

Including excitation, detection, TCSPC data acquisition and configurations.

System overview PicoQuant LU 4|6 integration with Nikon AX

System overview of PicoQuant LU 4|6 integration with Nikon AX microscopes, combining pulsed and CW lasers, detectors, and TCSPC data acquisition.

System Overview Nikon AX

Covering excitation, detection, TCSPC data acquisition and configurations.

Technical Note: Polarization Extension Unit for LSM Upgrade Kits

This technical note describes a polarization extension for upgraded LSMs, enabling fluorescence anisotropy measurements for studying molecular orientation, dynamics, and interactions.

Technical Note: Combination of Pulsed and CW Lasers on an Olympus LSM

Technical note on combining pulsed and CW lasers in Olympus microscopes using a polarization beam splitter for flexible excitation and FLIM/FCS applications.

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