NovaISM

Image Scanning Microscopy Analysis Software

Advanced analysis software enabling high-resolution ISM and FLIM imaging in confocal microscopy.
User interface of NovaISM Image Scanning Microscopy analysis software displaying resolution-enhanced microscopy images, lifetime plots, and phasor analysis tools.

Key Benefits

Sharper images with higher resolution
Reliable results with transparent processes
Enhanced contrast in lifetime determination
Improved image contrast through out-of-focus rejection
Reproducible ROI selection using histograms of fitted parameters

High-Resolution ISM and FLIM Analysis in a Unified Workflow

Comparison of confocal imaging and NovaISM analysis using GATTA-SIM 160 nm nanorulers shows sharper structures and improved separation of fine features.

Pushing Confocal Imaging Beyond Its Limits

NovaISM is a powerful ISM and FLIM analysis software seamlessly integrated with the Luminosa microscope and fully optimized for the PDA-23 SPAD array detector. By combining pixel reassignment, computational sectioning, and advanced deconvolution, NovaISM delivers up to 1.7× higher resolution than conventional confocal imaging. Its fast, intuitive workflow reveals fine structural and functional details that standard approaches often miss, enabling researchers to extract sharper, deeper insights from every experiment. When used together with NovaFLIM software, it forms a uniquely powerful imaging and analysis environment that elevates confocal microscopy to an entirely new level.

Top: ISM-FLIM species separation in U2OS cells labeled for mitochondria (Tom20) and microtubules (α-Tubulin). Left shows separation after ISM, right after ISM, computational sectioning, and deconvolution. Bottom: Intensity profiles along tubulin filaments illustrate the progressive improvement in resolution and contrast across each processing step.

Images with More Resolution and Higher Contrast

NovaISM lets you follow every improvement step-by-step, from confocal-like input images to high-resolution, high-contrast ISM results. Starting from the summed signal of all 23 SPAD pixels, pixel-reassignment already boosts resolution by ~30%. Computational sectioning then removes out-of-focus contributions, dramatically increasing contrast in thicker samples. A final deconvolution step enhances structural clarity by an additional ~30%, revealing details that remain hidden in conventional confocal microscopy.

Luminosa confocal microscope combined with NovaISM enables advanced ISM-FLIM imaging and analysis workflows.

One Integrated Platform for High-Resolution Lifetime Imaging

In combination with the Luminosa confocal microscope and NovaFLIM, NovaISM enables advanced ISM-FLIM workflows including pixel-reassigned imaging, computational sectioning, and resolution-enhanced lifetime analysis within a unified imaging environment.

Highlight Benefits

Benefit: Precision

Quality and Precision

Ensure trustworthy results with computational sectioning and lifetime-species separation, while maintaining full transparency over all deconvolution and processing parameters.
Benefit: Time

Save Time, Focus on Sample

Streamline your workflow with one-click deconvolution, minimal user interaction, and efficient batch analysis of series measurements including parameter plots across multiple ROIs.
Benefits: Fexibility

Advanced Flexibility

Access raw time-tagged data from all 23 PDA-23 pixels and export results in multiple formats, including BMP, PNG, OME-TIFF, and scalable vector graphics for flexible analysis.

Advanced Computational Sectioning

Remove out-of-focus light and separate lifetime species

The computational sectioning is based on an unmixing of the intensity distribution over the PDA-23  detector array.  This process allows for rejection of light coming from out-of-focus planes which in thicker samples can be problematic as it limits the contrast, produces artifacts in the deconvolution process and interferes in the lifetime –species determination.  With computational sectioning offered by NovaISM all these problems are resolved. 

ISM-FLIM image of neuronal hippocampal culture showing lifetime contrast of TOM20 and SYPT1 markers

Intensity-Weighted ISM-FLIM Image

Intensity-weighted ISM-FLIM image. Colorscale indicates the fast lifetime contrast ranging from blue (shorter lifetimes) to red (longer lifetimes) sample: neuronal hippocampal culture, labeling of mitochondrial marker TOM20 with Cy2 (lifetime 1.3 ns) and synamptic vesicles marker SYPT1 with OregonGreen (lifetime 3.5 ns). Samples prepared by Dr. Eman Abbas, Rizzoli lab, UMG Goettingen.

NovaISM ISM-FLIM analysis separating in-focus and out-of-focus lifetime species signals

Lifetime Species Separation with Computational Sectioning in NovaISM

In NovaISM computational sectioning is performed simultaneously with lifetime species separation allowing for determineing in –focus and out-of-focus contributions independently for each lifetime species. For further analysis then only the infocus part can be used. Upper side: SYPT1, lower side: TOM20, left side: out-of-focus, right side: in-focus.

ISM-FLIM image after deconvolution showing lifetime-based multiplexing of SYPT1 and TOM20

Resolution Enhancement Through In-Focus Deconvolution

Deconvolution is then performed only on the in-focus part. In this way we solve the problems arising from out-of-focus light when deconvolution algorithms are applied in thick samples. The end result is an image with high resolution, extremely high contrast and simultaneous marker multiplexing based on lifetimes. SYPT1 in cyan, TOM20 in yellow.

Schematic showing computational sectioning separating in-focus and out-of-focus signals on PDA-23 detector

Simple Schematic of the Principle of Computational Sectioning

A simple schematic of the principle of computational sectioning. The distribution of light on the PDA-23 detector is fitted with 2 Gaussian of different widths. The in-focus part correspond to the narrow Gaussian and the out-of-focus part to the broader Gaussian. Parameters are estimated automatically by the software while the user can always fine tune if needed.

Advanced Analysis for High-Resolution ISM and FLIM Imaging

NovaISM provides powerful tools for enhancing resolution, streamlining workflows, and enabling flexible ISM-FLIM data analysis within confocal microscopy.

Intensity profile measurement resolving 160 nm spacing of SIM 160R nanorulers

Precision & Resolution Enhancement

  • Pixel-reassigned ISM imaging with up to 1.7× higher resolution
  • Computational sectioning removes out-of-focus light for cleaner data
  • Deconvolution on in-focus components for sharper structural detail
  • Clear visualization of ISM, sectioning, and deconvolution improvements
NovaISM software interface showing ISM-FLIM analysis, decay fitting, and phasor plot

Speed & Workflow Efficiency

  • One-click deconvolution with minimal user interaction
  • Fast, intuitive processing for ISM and ISM-FLIM datasets
  • Batch analysis for series measurements and multi-ROI workflows
  • Seamless operation within the Luminosa environment for immediate feedback
ISM-FLIM species separation of mitochondria and microtubules in U2OS cells

Flexibility & Advanced ISM-FLIM Analysis

  • Simultaneous computational sectioning and lifetime-species separation
  • Access to raw time tags from all 23 PDA-23 SPAD pixels
  • Fine-tuning options for sectioning and deconvolution parameters
  • Extensive export formats for images and graphs (BMP, PNG, OME-TIFF, SVG)
Relevant for Your Research​

Matching Applications & Methods​

Switcher A&M
Concept illustration of optical environmental sensing where time-resolved fluorescence lifetime detection monitors dynamic environmental signals and trace compounds.
Life Science | Materials Science | Metrology
In-Depth Scientific Resources

Scientific Resources

Access in-depth application notes and scientific posters with detailed methods, measurement data, and real-world use cases.

Poster: New Analysis Options for FLIM Imaging Modalities

Poster on advanced FLIM analysis in NovaFLIM and NovaISM, enabling GPU-accelerated fitting, phasor plots and ISM-FLIM for higher resolution

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Specifications

Licence typeLicense available for either 1, 2, or 4 years
Data formatsAvailable for *.spqr files and *.ptu files acquired with the PDA-23 SPAD Array Detector in Luminosa microscope
MinimalRecommended
Operating systemWin10 64-bitWin10 / Win11 64-bit
CPUIntel Core i3-8100 or AMD Ryzen 3 1300X Intel Core i7-13700 or AMD Ryzen 7 5700X
RAM8 GB32 GB
GPUAMD Radeon RX550/550 Series or Nvidia GeForce GT 1030AMD Radeon RX 6700 XT or Nvidia GeForce RTX 3060
Screen resolutionQHD (2560 × 1440)4K (3840 × 2160)

Version Features

Luminosa

NovaFLIM

NovaISM

NovaFLIM+NovaISM

InstaFLIM

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Phasor plot for marker multiplexing

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Multi-frame analysis

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Batch analysis of series measurements (time-lapse,z-stacks, tiling, …)

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Advanced ROI handling, multi-ROIs, import of external ROIs

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Parameter plots of fitted parameters over multiple ROIs

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Representation of the image information as user defined 1D and 2D histograms of fitted parameters

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ROI selection via parameter histograms

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User configured analyses allowing for FLIM, FLIM-FRET, steady-state FRET and anisotropy imaging

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Extended export options of graphs and images

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Image Scanning Microscopy-FLIM (Resolution enhancement via a pixel reassigned image available in combination with PDA-23 Add-on)

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Re-assignement vectors calculation from image

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Resolution enhancement Deconvolution for ISM-FLIM (enhanced FLIM contrast via the rejection of contribution from out-of.plane light; Available in combi with PDA-23 Add-on)

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Computational Sectioning in combination with lifetime-species seperation (enhanced FLIM contrast via the rejection of contribution from out-of.plane light; Available in combi with PDA-23 Add-on)

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Expand Your System

Complete your setup

Combine compatible components to build a complete setup tailored to your experimental requirements and measurement workflows.

Single Photon Counting Confocal Microscope
Reliable single-molecule precision
Time-saving workflows
Fast learning for non-expert users
Flexible for custom experimental setups
Quick results through automated analysis
Expert-level application support
Fluorescence Lifetime Imaging Analysis Software
Fast GPU-accelerated analysis of FLIM, FLIM-FRET, and anisotropy data
FLIM analysis modes: Fast Lifetime, decay fitting, phasor plots, and pattern matching
Efficient batch analysis of z-stacks, time-lapse series, and stitched images
Advanced, flexible ROI handling and data export options
Reproducible ROI selection using histograms of fitted parameters
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