Second Harmonic Generation Microscopy (SHG Microscopy)

Label-free Imaging of Non-Centrosymmetric Structures in Advanced Materials

A nonlinear optical microscopy technique that images high-resolution images in materials through second-harmonic generation (SHG).
Second-harmonic generation intensity image of a MoS₂ monolayer acquired with 1064 nm excitation using the MicroTime 100 photoluminescence microscope. The absence of measurable fluorescence lifetime confirms the coherent and instantaneous origin of the SHG signal.
Table of contents

Nonlinear Optical Imaging of Structural Order

What is SHG microscopy?

Second harmonic generation (SHG) imaging microscopy is a nonlinear optical imaging technique that uses SHG as an intrinsic contrast mechanism to produce high-resolution images. SHG occurs in materials with non-centrosymmetric crystal structures. Because SHG does not involve electronic absorption, it is intrinsically label-free and highly specific to crystal symmetry. In materials science, SHG microscopy is widely used to probe crystal structure, layer orientation, grain boundaries, defects, and strain in semiconductors, thin films, and functional materials.

Second-harmonic generation intensity image of a WSe₂ monolayer recorded with 1064 nm excitation on the MicroTime 100 photoluminescence microscope. The uniform near-zero lifetime across the image verifies the non-resonant, coherent nature of the SHG process.

How does SHG microscopy work?

In second-harmonic generation (SHG) microscopy, a focused pulsed laser beam excites the sample, inducing a second-order nonlinear polarization in non-centrosymmetric regions of the material. This interaction generates photons at twice the optical frequency of the excitation light. The emitted SHG signal is collected through the microscope optics and spectrally separated from the fundamental excitation. By scanning the laser focus across the sample, a spatially resolved SHG intensity map is formed. The signal strength depends on crystal symmetry, orientation, and local electric field distribution, providing contrast based on structural rather than absorptive properties.

SHG microscopy Data & Analysis

SHG microscopy data typically consist of intensity maps that represent the spatial distribution of the second-harmonic signal within a sample. Data analysis focuses on correlating SHG contrast with crystal symmetry, domain orientation, layer number, and structural heterogeneity. Polarization-resolved SHG measurements provide additional insight into crystallographic orientation and tensor properties. In materials research, SHG images are often compared with reflection or photoluminescence to distinguish structural from electronic or optical effects to achieve a comprehensive characterization of the material.

SymphoTime 64 software interface for fluorescence lifetime imaging analysis

PicoQuant software for SHG microscopy analysis

SHG microscopy data can be analyzed using SymPhoTime 64 and snAPI, as well as QuCoa for advanced photon-counting data processing and visualization.

Comparison of reflection imaging and second-harmonic generation intensity imaging of a MoS₂ monolayer. While reflection reveals overall morphology, SHG selectively highlights non-centrosymmetric domains and crystallographic orientation, providing structural contrast not accessible with conventional optical microscopy.

Why use SHG Microscopy?

SHG microscopy offers a unique combination of label-free contrast, high spatial resolution, and intrinsic sensitivity to crystal symmetry. It enables direct visualization of non-centrosymmetric phases that remain invisible to conventional optical microscopy. In materials science, SHG microscopy is particularly valuable for studying 2D materials, semiconductors, nanomaterials, thin films, and new functional materials. The technique allows non-destructive mapping of grain boundaries, defects, strain, and layer stacking while avoiding photobleaching and minimizing sample preparation.

MicroTime 100 upright time-resolved photoluminescence microscope system

Instrumentation requirements for SHG microscopy

Reliable SHG microscopy requires a pulsed laser source with sufficient peak power to drive nonlinear optical processes, typically operating in the picosecond or femtosecond regime. A scanning or confocal microscope provides high spatial resolution and optical sectioning capability. Efficient spectral filtering is essential to isolate the second-harmonic signal from the fundamental excitation light, while photon-counting detectors enhance sensitivity for weak SHG signals. Stable beam alignment, polarization control, and precise scanning electronics are critical for reproducible and quantitative SHG imaging in materials research.

Relevant for Your Research​

Matching Applications

illustration of a van der Waals heterostructure emitting quantum light
Materials Science
Time-resolved photoluminescence emission spectrum with three peaks from different layers. Adapted from Buschmann et al., J Appl Spectrosc 80, 449–457 (2013).
Materials Science
Schematic illustration of nanostructured materials on a substrate, highlighting heterogeneous nanoscale architectures relevant for optical and time-resolved characterization of nanomaterials.
Materials Science

Application Examples

Second-harmonic generation intensity image of a MoS₂ monolayer acquired with 1064 nm excitation. The photon-counting scale illustrates SHG signal strength, while the absence of measurable fluorescence lifetime confirms the instantaneous and coherent nature of the SHG process.

SHG Imaging of 2D Materials with Picosecond Pulsed Lasers

Second-harmonic generation imaging of monolayer MoS₂ and WSe₂ on PDMS was performed using the MicroTime 100 confocal microscope with 1064 nm picosecond excitation. SHG, reflection, and time-resolved photoluminescence data were acquired from the same region, enabling correlative structural and optical characterization of two-dimensional materials.

Application Example

Top: TRPL image of a CIGS solar cell acquired with SNSPD detector, bottom: Normalized photoluminescence decay curve in bulk material (red) and at a defect site (blue).

Time-Resolved Photoluminescence (TRPL) Imaging

A time-resolved technique that maps charge carrier lifetimes and recombination dynamics. While SHG microscopy probes crystal symmetry, TRPL imaging reveals electronic properties, providing complementary insight into defects, strain, and material quality.

In-Depth Scientific Resources

Premium Resources

Access in-depth application notes and scientific posters with detailed methods, measurement data, and real-world use cases.

Poster: SHG Imaging Microscopy

Second-harmonic generation imaging with picosecond lasers reveals crystal structure, defects, and layer orientation in advanced materials.

Download

Request your file

Please fill out the form below to receive the requested file. After submitting your details, the file will be sent to you by email.

* Required

Info Request

Info Request

Contact us

Please fill out the form below to request more information about our products and services. You may also use it to ask for pricing, availability, technical specifications, or any other details relevant to your inquiry. Our team will be happy to review your request and get in touch with you. If additional information is needed to process your inquiry, we will let you know.

* Required

Contact us

Please fill out the form below to request more information and prices about our product. Our team will be happy to review your request and get in touch with you. If additional information is needed to process your inquiry, we will let you know.

* Required